Scaffold Ga0157360_1002509

Overview

Basic Information

• Taxon OID: 3300013000
• Scaffold ID: Ga0157360_1002509
• Source Dataset Name: Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6727
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → unclassified Leucoagaricus → Leucoagaricus sp. SymC.cos (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location

• Location Name: Brazil: Ribeir?o Preto, State of S?o Paulo
• Coordinates
  • Lat. (^o): -21.165
  • Long. (^o): -47.848

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018840	Metagenome	232	Y
F021900	Metagenome	216	Y
F022564	Metagenome	213	Y
F067284	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157360_100250910	F018840	N/A	MNLLDYPPLTKRQRVWYLLKETLEVYQQHEELAREIGMSVVGGESPCKRCADFGILCIPQNLP*
Ga0157360_100250911	F067284	AGG	MARRSKMRKAKQQMDVEWKAEISQKLEDLGKLWGLRKDIQRIVVALEKLAGIEDKDSDEE
Ga0157360_10025094	F022564	N/A	MPALGLVNAFIPEDALVLAALSDAPPGVSQLLRTLGKHLLSPLLPLRRRKVKRRRLVLVPGYLLLLGSLQASSLTELPLSSSLLLPLPLLLKGEHIL*
Ga0157360_10025095	F021900	N/A	MDSQLEFALEPFLYPQNIILYDECIEQVMINLELVLRPQEVFRMNWHWVTKRVTEGLHSRFTFG*