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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300013000 Open in IMG/M |
| Scaffold ID | Ga0157360_1001933 Open in IMG/M |
| Source Dataset Name | Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7703 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (69.23%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Brazil: Ribeir?o Preto, State of S?o Paulo | |||||||
| Coordinates | Lat. (o) | -21.165 | Long. (o) | -47.848 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006878 | Metagenome | 362 | Y |
| F013968 | Metagenome | 266 | Y |
| F015953 | Metagenome | 250 | Y |
| F017770 | Metagenome | 238 | Y |
| F018491 | Metagenome | 234 | Y |
| F093009 | Metagenome | 106 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157360_100193313 | F013968 | N/A | VIKGREKLCNVKGDHTSPKTLGLSRVNQVSEKETSIFSRSLSDATELVGMKDTVFDSIKLELPSNHLFNELAKGVEQNNGLKGLRSVIGRFVRLRNNDRD* |
| Ga0157360_10019335 | F093009 | GAG | MILEVVDVLEPGPISFSSVSSSSKVEKNSENAFLESLAAEILLEECLTIQQA* |
| Ga0157360_10019336 | F018491 | GAG | MKLREMRLRNYLQHTEERNQVRYSWRLRELDRWAILRREGKGTRVLLQELDKVLDSWH* |
| Ga0157360_10019337 | F006878 | AGG | VGKPAAVGKDVSTCFHLAMATWTVGALCREEALSKLPNGSMVKDSSSCPGTQGDRLANKWELAPTFSIRGLEKVLDTTFEREEVTTLG* |
| Ga0157360_10019338 | F017770 | AGTAG | MASSSNLGTGSVFMCQEVKGPLRLARAVPEVNRAIRVVGEKAPKSLDNGKGVGLA* |
| Ga0157360_10019339 | F015953 | GAG | MMIMRLTSKEVALTTPSRIANNSASRAVAHPVGALDDDTCSPSLQKWATETACMFLGGITLVSVATTSVDGSEEAS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |