Scaffold Ga0157360_1001740

Overview

Basic Information

• Taxon OID: 3300013000
• Scaffold ID: Ga0157360_1001740
• Source Dataset Name: Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8042
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location

• Location Name: Brazil: Ribeir?o Preto, State of S?o Paulo
• Coordinates
  • Lat. (^o): -21.165
  • Long. (^o): -47.848

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021900	Metagenome	216	Y
F026755	Metagenome	196	Y
F028987	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157360_100174012	F028987	AGGAG	MEFPDIIEEESGCFFHCNSCVHRNEVHSFEDRIHDSHDDVMSRGLWEFDHEINTERVPLFVQNGEWLELANRRVSPRFCLEAEITDTHMLADVPRHLGPPVIPGHQF*
Ga0157360_100174015	F021900	AGAAG	LIHFILMDSQLEFALEPFLYPQNVTLYDEYIEQVIIDLELMLRPREAIKINWHQVTKRVTERLHSRSTFGWTDLERW*
Ga0157360_10017403	F026755	N/A	MCCALVSSCEVGCIFQNDGSRQDRGPKWASRGVREDKIRLGLVNVNLQTEKIYYNYSVLIGSLE*