Scaffold Ga0157360_1001240

Overview

Basic Information

• Taxon OID: 3300013000
• Scaffold ID: Ga0157360_1001240
• Source Dataset Name: Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9531
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location

• Location Name: Brazil: Ribeir?o Preto, State of S?o Paulo
• Coordinates
  • Lat. (^o): -21.165
  • Long. (^o): -47.848

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030624	Metagenome	184	Y
F063226	Metagenome	129	Y
F076690	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157360_10012402	F030624	N/A	VTEFLVLPSVLLYFLKNPPKLFLNGNPSPNRLGHSLTLEVDSSLRVIGVGFQLYGQLKKSPYDSTGVLGSSAVSTASQATRLGKDSSVTIQDKRMS*
Ga0157360_10012403	F076690	AGG	MANYSEIKRVIPSQSRLVTAVGGNWKVEEWECIGEVIGRTGKLRRGVVGRLDEGNACENKTAQDCCLCLQFIETLKT*
Ga0157360_10012404	F063226	GGA	MIHSELLTPSVSKCPSPLGLKFPSRESLGGFLESKIEHLEKLET*