Scaffold Ga0157360_1000643

Overview

Basic Information

• Taxon OID: 3300013000
• Scaffold ID: Ga0157360_1000643
• Source Dataset Name: Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13244
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location

• Location Name: Brazil: Ribeir?o Preto, State of S?o Paulo
• Coordinates
  • Lat. (^o): -21.165
  • Long. (^o): -47.848

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000383	Metagenome	1208	Y
F037000	Metagenome	168	Y
F071824	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157360_10006433	F037000	N/A	MKTICLRARQLKIAASLYSSAKGLRAIYCLEKNPQSRIRGVGSGSQVIRRDAVSLFHSYYLWEFGSFLCFFSFVVLLLCNPNKIL*
Ga0157360_10006434	F071824	N/A	VVGGSFQSINLICFCLNRKEVDPELLFKVPSCLGKKNASVCFLTEYVFGPLGSTTTFKECKGPENFLLFAVELLQGQADVERAGVQKYAAVVTFFTEVQRTGELGICSSCC*
Ga0157360_10006438	F000383	N/A	LYYAASFISRRASVHLYFSGLPIYLWVVVLEPGITEDHVLLSEAGDSEEHPFRVGFVMENYVYNFGDLACLVGGAIDVVHRYGARDALGGNTLCMDKIFIYETAHSSGVQKCLDGVHLAGVCGADFYWENDRHSAGIKGIDGESFG*