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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300013000 Open in IMG/M |
| Scaffold ID | Ga0157360_1000260 Open in IMG/M |
| Source Dataset Name | Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 21488 |
| Total Scaffold Genes | 31 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (32.26%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Brazil: Ribeir?o Preto, State of S?o Paulo | |||||||
| Coordinates | Lat. (o) | -21.165 | Long. (o) | -47.848 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000383 | Metagenome | 1208 | Y |
| F002648 | Metagenome | 539 | Y |
| F020638 | Metagenome | 222 | Y |
| F057804 | Metagenome | 135 | Y |
| F088011 | Metagenome | 109 | Y |
| F093009 | Metagenome | 106 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157360_10002601 | F093009 | N/A | PVMILEAVGVLGPGLTSSSSLSSFSEEEEGSGDAFLESSAAKTLLEERLTVRRARERFLG |
| Ga0157360_100026016 | F020638 | AGAAG | METRALNVCQSGPPLEYAKDSEEDETPIWMCEAEYEQGDQLFMTKILLESMAEDLRTASMTS* |
| Ga0157360_100026017 | F000383 | N/A | LFLSYHTASFASRRALVHLYFSGLPIDLWVVVLEPGITKDYVLPSEAGDSEERPFRVGFVMENYVYHFGDLTCLVGEAVYVVYQYGARDALGVNTLYTDKVLIYEVVRNTGVQKHLDGMHLAGVCGADFYWEDD* |
| Ga0157360_100026018 | F088011 | AGG | VKDCLHCLDVQRLTAEQREELIEDLIALKDAVKEEEVCSAPEEDFA* |
| Ga0157360_100026019 | F057804 | GGA | MGIPLDGAGGGRGSLGRIEGRAAGGEQNTKKGVGRVGVEHTGVTVVDWSIDWNVSFANCVWSILWAAVYQASRSVSASRLKNMVAI* |
| Ga0157360_100026020 | F002648 | N/A | LKKARVQKIFSLLQVNCSGARHKYSVQELRKACLELHLPEKSRGEGSFGLVRCLDEVAEAGKEGLTRGGDIGIGNGVMVGAGVELVISWVICCN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |