Scaffold Ga0157362_1035470

Overview

Basic Information

• Taxon OID: 3300012998
• Scaffold ID: Ga0157362_1035470
• Source Dataset Name: Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3013
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus → Agaricus bisporus var. burnettii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location

• Location Name: Brazil: Ribeirao Preto, State of Sao Paulo
• Coordinates
  • Lat. (^o): -21.166
  • Long. (^o): -47.848

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015423	Metagenome	254	Y
F067285	Metagenome	125	Y
F075516	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157362_10354703	F075516	GAGG	VDGDGDLAMEDDALGGFRELQEGAVCGGAVDDWGRDRTEFCEEAEN*
Ga0157362_10354704	F015423	AGAAG	MHSLEGNFTGNDTTSEIILFEVPSNKCNSTGGVGVVGRECPQAKAESKKQCVDPESTSVWMGIGWRWSEAHTREEIRGIQREFGSERADVLRHIGLVVAQTSSMRLPVCAESWEPRSSFLRGSQRAESLVPPE*
Ga0157362_10354705	F067285	GGAG	MKFVTGVSVSALDLLKTSAYSWYSSGMAERLIFSEMVVDLACIVEWNWRENVFKPERREAGSRAGALIIAI*