NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157362_1008263

Scaffold Ga0157362_1008263


Overview

Basic Information
Taxon OID3300012998 Open in IMG/M
Scaffold IDGa0157362_1008263 Open in IMG/M
Source Dataset NameFungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5932
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location
Location NameBrazil: Ribeirao Preto, State of Sao Paulo
CoordinatesLat. (o)-21.166Long. (o)-47.848Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000383Metagenome1208Y
F001585Metagenome667Y
F057804Metagenome135Y
F088011Metagenome109Y
F091121Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0157362_100826310F091121AGGMQELRKAYLELHLPEKSGGEGSFGLARCLDEVARAGEEGLTREGDADIGGGATVGTGVELVISWVICCN*
Ga0157362_10082632F001585GGAGMEFPDVVKKESGCSFRCDCCVHRNEVHSLGDGIYDSHDGVMSRGLREFDHKIDTERIPPCVWNRERLKLANWGVSPGFRPEAEITGTYILANIPRHLRPPVVSGHQF*
Ga0157362_10082637F000383N/ALFLSYHTASFALRRALVHLYFSGLPIDLWVVLLEPGVTEDHVLPSEAGDSKEHPFGVGFVMEDYVHHFGDLTCLIGGAVHIVHQYGVRDAPGVNTLCIDKVSIYEVVRSTRVQKHLDGIYLAGVCGADFYWEDD*
Ga0157362_10082638F088011GAGGVKDCLHHLDIQRLTAEQREELIEDLMALKDAVEEEEVCSALEEDFA*
Ga0157362_10082639F057804GGAMGIPPDGAGRGGEGLGGTEGRTTGEEESTEKGVGRVEAERAGVIVVDQSVDWNASFANHVWLILRAAAYQASRSVSADRPKSIVAI*
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Institute for Fundamental Biomedical Research
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