Scaffold Ga0157362_1005150

Overview

Basic Information

• Taxon OID: 3300012998
• Scaffold ID: Ga0157362_1005150
• Source Dataset Name: Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6961
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location

• Location Name: Brazil: Ribeirao Preto, State of Sao Paulo
• Coordinates
  • Lat. (^o): -21.166
  • Long. (^o): -47.848

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000977	Metagenome	815	Y
F018840	Metagenome	232	Y
F034778	Metagenome	173	Y
F074229	Metagenome	119	Y
F080719	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157362_10051501	F074229	N/A	SRASEMKARAKKAPSINLHSEKYIRILQMLETQLKRNRKGNSPFYHSPSYLSSMTLPCGYDSRHLPVLHTSQT*
Ga0157362_100515013	F018840	N/A	LLPLSPPSNEEMNLIDFLPLTKRQHIRYLPKETSEAHQQCEELAKEMGIITVGEGSPCERCVDFRILYIPQNLP*
Ga0157362_10051502	F000977	AGCAG	MTPRRQIKSLSVTSDPITAGLSKETDAPPDDNRITDTRTYCHVFLDCIWSRRKPVRGSGNNRQE*
Ga0157362_10051506	F080719	GAG	MDVRQLTSEQQEELIEDLLALKDVVPIEASCPPEEEEDFA*
Ga0157362_10051508	F034778	N/A	VVEGTFQHVDCIHFHVNRKEVKPELLLKISPGLDRENASVRFLTKHIFRPLGSTTFFEERESPESPFFFVVELPWGQVNVEGAGVQKCVAIVMFSAEVWRTRELGTCSSRRWSRGWRHQRR*