Scaffold Ga0157362_1003657

Overview

Basic Information

• Taxon OID: 3300012998
• Scaffold ID: Ga0157362_1003657
• Source Dataset Name: Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7788
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location

• Location Name: Brazil: Ribeirao Preto, State of Sao Paulo
• Coordinates
  • Lat. (^o): -21.166
  • Long. (^o): -47.848

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000523	Metagenome	1050	Y
F004107	Metagenome	452	Y
F017427	Metagenome	240	Y
F067285	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157362_100365710	F000523	GGA	MYLAMIEIMLQRWGKDVGVESDLLNDLGFNLCVAPQSPVVRLVAYFGVKEVAKIEVLRSRVKESEWTRGD*
Ga0157362_10036572	F017427	AGAAG	MHSLEGNFTGNNTTSEIILFEVPSNRHSSTGGVGVVGRECPQAKAESKKQCVDPEFTSIRMGIG*
Ga0157362_10036573	F004107	GAGG	VNCRGFSAGENGGFTKVSTGGTEAGLWSTDGGQKDIDPETQSINGL*
Ga0157362_10036574	F067285	GGA	MLAYSWYSSGIAERSIFSEIVVDLACIVEWNWRENVFEPERREARSRAGALIIAI*