Scaffold Ga0157362_1003237

Overview

Basic Information

• Taxon OID: 3300012998
• Scaffold ID: Ga0157362_1003237
• Source Dataset Name: Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8097
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus → Agaricus bisporus var. burnettii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location

• Location Name: Brazil: Ribeirao Preto, State of Sao Paulo
• Coordinates
  • Lat. (^o): -21.166
  • Long. (^o): -47.848

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053687	Metagenome	140	Y
F056216	Metagenome	137	Y
F078053	Metagenome	116	N
F080717	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157362_10032371	F080717	GAG	VREQDGSRPPSLSMVRRDAQGPTIMRGRVTGVGLGCLGVVSRCLGGVPYHHYGLARIGNSEVFFVSLSLLSFCFVIIIKYSRAQEEKQ
Ga0157362_100323711	F078053	GAGG	MNIEWDYSYYQLWSDNEWLVDEMIAMQEETLMVQNEDITMQ*
Ga0157362_10032374	F053687	GGAG	MYVTPSLSLREVAIITGSLEKRPKEAIDCLMRLEELLGSLGTGNPLKIGGGKTGGLKDGDLSIRIHYETAFHPKVRISLIITFSGE*
Ga0157362_10032377	F056216	N/A	VFVVDATIGSSGRGRETLDTGTLKINSQYCLRKKNLECTLEGVASEGALSRAGCLAALNWSSGDRDDEITRKRQTRVVSHVGLRKPRSVYKQMGKRKLDHARDKRVRKHSEH*