Scaffold Ga0157362_1000445

Overview

Basic Information

• Taxon OID: 3300012998
• Scaffold ID: Ga0157362_1000445
• Source Dataset Name: Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14017
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location

• Location Name: Brazil: Ribeirao Preto, State of Sao Paulo
• Coordinates
  • Lat. (^o): -21.166
  • Long. (^o): -47.848

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002193	Metagenome	584	Y
F076690	Metagenome	117	Y
F083490	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157362_100044511	F076690	AGG	MANYSKIKRVIPPRSRLVTAVEGNWKVKGWECITEVRGRTGKLRRGVVGRLDEENTCENKTAQDCCLCLWSIETLKV*
Ga0157362_100044512	F083490	GAG	MKVFCSRFQEDPRHEESVLLLIFNLTYPEGGLVFFRVFCILWRRSRSTDVDGSDLHFPLQHLFLSYCTASFTLREAPIYLHFSGLPIDLQIMVLEPDVAEDHALLPEVRDSEEHPFGVGLIMEDYIYHFGDLSCFVRGAIHVKYRYGTRDALGTNTSCMDKIFVYEVADGSGVQKRFDGMHLAGVSGTDLDRQDNRCSAGVESIGRELSGESFFPFGSPRQGCPDRSGGGEGGCVYRFMNFCIDFFYV*
Ga0157362_100044517	F002193	GGAG	MFREAMEFPDIMEEESGCSFRYDRRVRRNEVYSFGDSIHDRHDSIMSGGLREFDHKIDTEGIPLCVQNGERLKLANRRMSPRFCPEAEIASTHILANVPRYLGPPVVPGH*