Scaffold Ga0157362_1000306

Overview

Basic Information

• Taxon OID: 3300012998
• Scaffold ID: Ga0157362_1000306
• Source Dataset Name: Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16065
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location

• Location Name: Brazil: Ribeirao Preto, State of Sao Paulo
• Coordinates
  • Lat. (^o): -21.166
  • Long. (^o): -47.848

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000383	Metagenome	1208	Y
F017769	Metagenome	238	Y
F088011	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157362_10003061	F017769	N/A	NLVIPTHRMCSPFRSRGRGSSRELERGNSVRELACNDPRGNRCSGTRTDLLLRGRRGLRRCFPRVLSS*
Ga0157362_100030611	F088011	GAGG	VKDCPHCLDVQRLTAEQREELIEDLIALKDAVEEEEVCLVPEEDFV*
Ga0157362_100030612	F000383	N/A	LFLSYHTASFTSKRVSVHLYFSGLPIDLWVVVLEPGISEDHVLPSEAGDSEERPFEVGFVTKDYIYHFGDLTCLIGGAVHIIHRYGVRDTLGVNTFCIDKVSIYKVAHSSGVQKRLDKMYLASVCGTDFYWEDDQRSTGVEGIDGESFG*