Scaffold Ga0157362_1000242

Overview

Basic Information

• Taxon OID: 3300012998
• Scaffold ID: Ga0157362_1000242
• Source Dataset Name: Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17299
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (38.10%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location

• Location Name: Brazil: Ribeirao Preto, State of Sao Paulo
• Coordinates
  • Lat. (^o): -21.166
  • Long. (^o): -47.848

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000523	Metagenome	1050	Y
F004107	Metagenome	452	Y
F018112	Metagenome	236	Y
F029616	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157362_100024210	F018112	N/A	MHSLEGNFTGNNTISEIILFEVLSNRRSSTGRVGVVGREYPRAKAESKKQCIDLESTSVRIGIGWRWSKAHTRREIRGIQRELGSERADALRCIGLVVAQMSSM*
Ga0157362_100024211	F004107	GAG	LGLDGDISDGVNYREFSAGENEGFTKVSTKGTEAGLWSKDGGQKDIDPETQLINGL*
Ga0157362_100024212	F029616	N/A	MGIFFKINPEVVRTVRSKCFCFGLAKDICILMIFLQNRGKINFLRDGSGFGLHCGTELESKYFQA*
Ga0157362_100024218	F000523	N/A	VIAEPESRLRRTGKDIRAENDLLNDLGFNLYIALQSLVVRLVAYFRVMEVIKTEVLSGQAKELERIR*