Scaffold Ga0157361_1014265

Overview

Basic Information

• Taxon OID: 3300012995
• Scaffold ID: Ga0157361_1014265
• Source Dataset Name: Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1818
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location

• Location Name: Brazil: Ribeir?o Preto, State of S?o Paulo
• Coordinates
  • Lat. (^o): -21.168
  • Long. (^o): -47.846

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017769	Metagenome	238	Y
F032107	Metagenome	180	Y
F049333	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157361_10142651	F017769	N/A	MCSPFRSRGRESSRELERGNSMRELTCNDPRGSRYPETRANLLLFTFLLLRGRRELRRCIPKDLSS*
Ga0157361_10142652	F032107	GGAG	MSWDDQVSAEKSRGLAFGMTSAPQAPLSTSLMPHGPNHGIAESSSQVEGSSAVAGTCDMTGDYDTLVICDSDSLPQASQHVTSNIVTYDVTHDSDLWDGNHYVTSLSGHFGHLENNTKVLASSILCIACFIQKHPIGSCPIEQFPLILGAGSIIWHLFQTVSAAGWDHFKVSP*
Ga0157361_10142653	F049333	AGG	VATFAEVGLAIAVLAGGGGGGALNTTGVEVGTFWEGAERLVERETLPLLLLFLLVTVVKGASSTSEGESG*