Scaffold Ga0157361_1003359

Overview

Basic Information

• Taxon OID: 3300012995
• Scaffold ID: Ga0157361_1003359
• Source Dataset Name: Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4793
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Psathyrellaceae → Coprinopsis → Coprinopsis cinerea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location

• Location Name: Brazil: Ribeir?o Preto, State of S?o Paulo
• Coordinates
  • Lat. (^o): -21.168
  • Long. (^o): -47.846

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000709	Metagenome	925	Y
F029614	Metagenome	187	Y
F100120	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157361_10033596	F000709	N/A	MVLEPGVAEDHALLPEVGDDEERPFRVGLITEDCIYHFRDLPCFVRGAVYVKHQYGTRDASGTDTFHTDKILVYEVAGGSGVQKRFDRMHLTGVGGTDLDRQDDRHSAGIKGVGGESFGESFLPFGSPRQDCPDRSRGGERGCVYRFTNFCIDFFYI*
Ga0157361_10033598	F029614	N/A	LVVHGAFQSVNGICFCIDRKELTPELLFEVSPRLDRKNASVHLLVKEVLRPPRGTSVFEKGEGPKDFLLIAAELLWSQA*
Ga0157361_10033599	F100120	N/A	MLLPVDTPPAVADALGYLQHHLQELTEHQNALEHIINNTLAGLTAQLQ*