Scaffold Ga0157361_1002064

Overview

Basic Information

• Taxon OID: 3300012995
• Scaffold ID: Ga0157361_1002064
• Source Dataset Name: Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6505
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location

• Location Name: Brazil: Ribeir?o Preto, State of S?o Paulo
• Coordinates
  • Lat. (^o): -21.168
  • Long. (^o): -47.846

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018112	Metagenome	236	Y
F032494	Metagenome	179	Y
F075516	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157361_10020642	F032494	GAG	VEKYKYPSSATETTFEYKYQMATETAEWNTSKQFSAKETALQNVYKYSRKDFFFELEF*
Ga0157361_10020648	F018112	AGAAG	MHSPEGNFTGNDTTSEIILFKVPSNKRSSTGGVGVVGRECPRAKAESKKQCVDLESTSVRMGIGWRRSEAHTRGEMRGIQREFRSERADALRRIGLIVAQMSST*
Ga0157361_10020649	F075516	GAGG	VDRNGDLAMKDDALGGFRELREGAVCGGAVDNWGRDRTEFCEEAEN*