Scaffold Ga0157361_1001667

Overview

Basic Information

• Taxon OID: 3300012995
• Scaffold ID: Ga0157361_1001667
• Source Dataset Name: Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7408
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location

• Location Name: Brazil: Ribeir?o Preto, State of S?o Paulo
• Coordinates
  • Lat. (^o): -21.168
  • Long. (^o): -47.846

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006878	Metagenome	362	Y
F008009	Metagenome	340	Y
F015953	Metagenome	250	Y
F017770	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157361_10016675	F006878	AGG	MGKPAAVGKDVSMCFHLAMATRTLGALCREKALSELSNESMVKNGSSRPGTQDDRLANKWKPAPTFSIGGLEKVLDTTFEREKVTTLR*
Ga0157361_10016676	F017770	AGTAG	MASSSDLGTGSVFMCQEVKGPLSFAWAVPEVNGAIRAIGEETPKGLDNGKGVGLA*
Ga0157361_10016677	F015953	GAG	VSTALLAAVRESVMITMHLTSKEVALTTPSRIANNSASRAVARPAGALDDDTCSPSLQKWTTETACMFLGGITLASVATTNVDRSEKAS*
Ga0157361_10016678	F008009	AGAAGG	MTKSVEGIELEFASVPIGAVTGMERDLIRKVVQQPTSWAYLRVE*