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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012995 Open in IMG/M |
| Scaffold ID | Ga0157361_1000373 Open in IMG/M |
| Source Dataset Name | Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19030 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (50.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Brazil: Ribeir?o Preto, State of S?o Paulo | |||||||
| Coordinates | Lat. (o) | -21.168 | Long. (o) | -47.846 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004107 | Metagenome | 452 | Y |
| F018112 | Metagenome | 236 | Y |
| F018840 | Metagenome | 232 | Y |
| F058579 | Metagenome | 134 | Y |
| F093009 | Metagenome | 106 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157361_10003731 | F093009 | N/A | LEAVGVLGPGLTFSSSLSSSSEKEKSSGDAFLETSAAETLLEECLTVRQARERPLG* |
| Ga0157361_100037311 | F018840 | N/A | MKIFQPPLSPPSDEEMNLLDYLPLTKRQRVWYLPQETPEARQRREELAREMGVLTVGGGSPCERCADFGILCIPQNLP* |
| Ga0157361_100037316 | F004107 | GAG | LELDGSVSDGVNCRGFSAGENRGFTKVSTGGTEAGFWSTNGGRKDID* |
| Ga0157361_100037317 | F018112 | N/A | MHLPERNFTGNDTTSEIILFEVPSNKRSSTGGVGVVGRECPRAKAESKKQCIDPESTSVRMGIGWRWSEAYTRGEMRDIQREFGSERADALRCIGLVVA* |
| Ga0157361_100037320 | F058579 | GGA | MQCRREMYLAIRERRLRQQDKNVRAESDLLNDLGFNLCVAPWSLVVRLVVYFGVEKVAKTEVPES* |
| Ga0157361_10003739 | F058579 | GAG | VQRQREMYLPIRERRLRRQDKDIRAESDLLNDLGFNLCVAPWSLVVRLVVYFGVEKVAKTEVPESRVKESSEQDGLRTR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |