Scaffold Ga0159060_1003748

Overview

Basic Information

• Taxon OID: 3300012990
• Scaffold ID: Ga0159060_1003748
• Source Dataset Name: Tailings pond microbial communities from Northern Alberta -TP6_2010 BML May 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4013
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Wastewater Microbial Communities From Base Mine Lake, Ft. Mcmurray, Alberta, Canada - Surface, May 2015

Source Dataset Sampling Location

• Location Name: Canada: Alberta
• Coordinates
  • Lat. (^o): 57.02
  • Long. (^o): -111.55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026858	Metagenome / Metatranscriptome	196	Y
F041080	Metagenome / Metatranscriptome	160	Y
F091587	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0159060_10037481	F091587	GAGG	MAYNPYGGGSGSIVVTPSKPIVTARRLGSPNARLTDTKHGKAVRRTRPRHAVTTNRPKVERILPTLSEHEQERIARALALSEREREFRATLPSVHIDAND*
Ga0159060_10037483	F026858	GAG	MKDNLLLDLTQREVEVIRMALRVQEDTHKRNDFPSLVLEVQGLRSKIADAIIDNARELTKA*
Ga0159060_10037486	F041080	GAGG	MSNDTILNLADELRIIADEISYNALDTSSDYPKRGTIVKALPSQTRFKPKSMWVSLGNGTYKHLTGSKGLV