NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0159060_1000543

Scaffold Ga0159060_1000543


Overview

Basic Information
Taxon OID3300012990 Open in IMG/M
Scaffold IDGa0159060_1000543 Open in IMG/M
Source Dataset NameTailings pond microbial communities from Northern Alberta -TP6_2010 BML May 2015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11669
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Wastewater Microbial Communities From Base Mine Lake, Ft. Mcmurray, Alberta, Canada - Surface, May 2015

Source Dataset Sampling Location
Location NameCanada: Alberta
CoordinatesLat. (o)57.02Long. (o)-111.55Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000324Metagenome / Metatranscriptome1299Y

Sequences

Protein IDFamilyRBSSequence
Ga0159060_100054316F000324GAGGMTFSVSPRHSFTYDGAVLNVFHANKGEGLPRHEHIYAHATLCCSGSCIVRKENRELVMNKDTQPVNLKANEWHEIEALEDGTVFINVFAENKQ*

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