Scaffold Ga0164305_10042088

Overview

Basic Information

• Taxon OID: 3300012989
• Scaffold ID: Ga0164305_10042088
• Source Dataset Name: Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2606
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Mt. Pleasant research farm, Cornell University, New York
• Coordinates
  • Lat. (^o): 42.4531
  • Long. (^o): -76.3842
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004510	Metagenome / Metatranscriptome	435	Y
F020244	Metagenome / Metatranscriptome	225	Y
F027637	Metagenome / Metatranscriptome	194	Y
F046611	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164305_100420881	F046611	GAG	MTMTSASPSLGADGVQFTPEVIEEIKDLVAQGISRDEIASRLGVSVGYLQVTCLRLGISLRRIILPNGSGRHTADVMIAHVREQKEVPQPTAPATPLAPTTAVPTAPGVIEVAFTTGARLRICGPVDASTLAAVMQALSDCGKTAQGERQIDEAVPSGTPPSP*
Ga0164305_100420882	F020244	N/A	MKKLTMAQLFAAPKRVRDTQDWFERAKLVIVAARDRAVETTAQQRAVPSMKRPPTVVHRRRLAERLSANS*
Ga0164305_100420884	F004510	GGAGG	MITWALIASAVIALVLVVLVQGKWTSRDSWFAAVFASAVMAMVIDHYINHIN*
Ga0164305_100420885	F027637	N/A	ANGHIAELKVRIVRQRAIVKYALDMGEHSEMAESLLDALEGSLSLFEKHRIFLLTCIGSFSALPAGDAATGRSWSRRNGHGAS*