Scaffold Ga0164306_10069230

Overview

Basic Information

• Taxon OID: 3300012988
• Scaffold ID: Ga0164306_10069230
• Source Dataset Name: Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2205
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Mt. Pleasant research farm, Cornell University, New York
• Coordinates
  • Lat. (^o): 42.4531
  • Long. (^o): -76.3842
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004510	Metagenome / Metatranscriptome	435	Y
F018628	Metagenome / Metatranscriptome	234	Y
F063136	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164306_100692303	F004510	GGAGG	MIILVLIGSAVIALVLVVLVQGKWTRVDGWFAAVFASAVMAMVIDHYVNQIN*
Ga0164306_100692304	F018628	AGGAG	MRYTLIVTGLVLSSIVFATVSVRAQVSIDVTDHL*
Ga0164306_100692305	F063136	AGG	MSQITCDEYVHDKIPTSDFISFSAVGSLPLEARSMLSRWVIAEWLSGYYHAKRNNWIIDSESFENNVNKLNNYCYDEKNFKVPIIEAVE