NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164304_10675153

Scaffold Ga0164304_10675153


Overview

Basic Information
Taxon OID3300012986 Open in IMG/M
Scaffold IDGa0164304_10675153 Open in IMG/M
Source Dataset NameSoil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)781
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Mt. Pleasant research farm, Cornell University, New York
CoordinatesLat. (o)42.4531Long. (o)-76.3842Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029856Metagenome / Metatranscriptome187Y
F052743Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0164304_106751531F052743GGAGMTEAASPYLALRQAVRPAILACRLLAGDQERAGKLATECEDLLFLSAELLKATGRARLLGPGPGQAPLGPNDDGGERQAQLVDAYADAGLLWAKVVGSCLALAGALIERGDWDDVRALASFLVSSGEETAAAELRLVLGNAIWQRHSEQLRVISNTMPPAAIGDAISALRAVLREVPE
Ga0164304_106751532F029856N/AYATAERALRRAGIGFFGLRAVLRVLSPAESDALLGVAAAASLDDDRALYRDTEWPVEQVEKFKPYSIASLLAFAKEGFRSTP*

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