Scaffold Ga0164304_10000030

Overview

Basic Information

• Taxon OID: 3300012986
• Scaffold ID: Ga0164304_10000030
• Source Dataset Name: Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37826
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (51.61%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Mt. Pleasant research farm, Cornell University, New York
• Coordinates
  • Lat. (^o): 42.4531
  • Long. (^o): -76.3842
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048032	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164304_1000003012	F048032	N/A	MDTKKQDQKQAKTLPLTQLPIVTLTDKDMSSVNGGTSHHG*
Ga0164304_1000003013	F048032	GAGG	MDTKKQSQKPAKTLPVTQLPIVTLTEKDMSSVNGGGYVWNGG*
Ga0164304_1000003014	F048032	GGAGG	VDTKKQDHKQGKTLPLAQLAIVTLTEKDMSSVNGGRISLPGGE*
Ga0164304_1000003015	F048032	GGA	MDNKKPDRKQAKTLPLTNLPIVTLTEKDMSSVNGGSYGTWAG*
Ga0164304_1000003016	F048032	N/A	MEVSTMDNKKPDPKQPKTLPLKNLPIVTLTEKDMSSVNGGGYSTWAG*
Ga0164304_1000003017	F048032	GAGG	MDTKKQSQKPAKTLPVTQLPLVTLTEKDMSSVNGGGSQSWAG*
Ga0164304_1000003018	F048032	N/A	VEDSTVDTKKQSQKQPKTLPLTQLPIVTLTEKDMSSVNGGRIGLPGGD*