Scaffold Ga0164309_10007629

Overview

Basic Information

• Taxon OID: 3300012984
• Scaffold ID: Ga0164309_10007629
• Source Dataset Name: Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5191
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Mt. Pleasant research farm, Cornell University, New York
• Coordinates
  • Lat. (^o): 42.4531
  • Long. (^o): -76.3842
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044630	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164309_100076294	F044630	N/A	MTVLVVLPAGAVQQRYQTASLTPTCDNDGRCTTANTIAPMGPDFIEALESKPSVEAAARRPRSLDANGNSAGGMVISRKTGARARVGVAYAARFQAYIDDLENNHGARVLFMGGIRPGRCSPSSEHPCGKAMDVCQLRRGVVDARCNLPGRFTLGRVAAAHGLFEGGRWCNSDYGHAQVDVTAAACGERGVRIVQRQSRSVQLQER*