Scaffold Ga0123349_10107196

Overview

Basic Information

• Taxon OID: 3300012983
• Scaffold ID: Ga0123349_10107196
• Source Dataset Name: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C2 Day 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1919
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Source Dataset Sampling Location

• Location Name: Point Reyes National Seashore, California, USA
• Coordinates
  • Lat. (^o): 38.04
  • Long. (^o): -122.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088017	Metagenome	109	Y
F096242	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123349_101071963	F096242	AGGA	MLLKLIKTRQFISGSHCEVWEINHLTGNRLLGEVFVLNEHLPLELIYRVTVTRSGICFAGRHCGWMWECERLETAVTEYLKVIQECREEIRIEVCEPEPDLPGYPEVDYNPDDYPIVFCE
Ga0123349_101071965	F088017	GGAGG	MKKDSFEVIWEFLAPDEQQFGNRKEACRRLWSTIPIPKQRQIYATLFWQREQKIEIEANPYFAISHCKPRPFNYNGSSVSLPNDTKLFIAKYGEHYGVYSKLDTEAFEMQDRKAFN*