Scaffold Ga0168317_1004425

Overview

Basic Information

• Taxon OID: 3300012982
• Scaffold ID: Ga0168317_1004425
• Source Dataset Name: Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCWfield
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5637
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings → Weathered Mine Tailings Microbial Communities From Hibbing, Minnesota, Usa

Source Dataset Sampling Location

• Location Name: Hibbing, MN, USA
• Coordinates
  • Lat. (^o): 47.432362
  • Long. (^o): -92.940835

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003175	Metagenome / Metatranscriptome	503	N
F008922	Metagenome / Metatranscriptome	326	Y
F056758	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0168317_10044251	F056758	GAG	MTEKGLSDTEHRSAELRYEWHSFLGLLAVLDLRPVDPVLYQRCQTAVWRSTGKGTISRTELQQVAGLHFQAETVGFDLLLAQLVRERILDPIVSSPFHFQIRRRNWTNPESAYAADDRLSLSGITREEQTARFQMLGLLDARILNSRLPEKRVQQIRKERDELERIYEA
Ga0168317_10044254	F003175	GGAGG	MNRIELSGKSQGKGRNGYFQLHSVELMNIPTDPDGQVLNIDFYPRRRVNCVGPARLLLNVEDATKLAQFLGEAVESRPPVANIEHGVLACECGHRGTPRLEESGYQVSHALIEIVGDAIIASGWDGSSRAVSEEGDAYWLMCDGCGKLHPLPPELHIDWR*
Ga0168317_10044255	F008922	AGGTGG	MTTKQRLACGAAILRSIDARRQRTGNRNELLALEQAIVDRELIELATGGLCDEKRELAGDRVRKRHVPAAKRDTGAFYEKDLRRAHR*