Scaffold Ga0168317_1000121

Overview

Basic Information

• Taxon OID: 3300012982
• Scaffold ID: Ga0168317_1000121
• Source Dataset Name: Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCWfield
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58819
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (52.31%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings → Weathered Mine Tailings Microbial Communities From Hibbing, Minnesota, Usa

Source Dataset Sampling Location

• Location Name: Hibbing, MN, USA
• Coordinates
  • Lat. (^o): 47.432362
  • Long. (^o): -92.940835

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041971	Metagenome / Metatranscriptome	159	Y
F079365	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0168317_100012135	F079365	N/A	VRRLSVLPALVGLLLAGCGGAKQSHSVLDVSKAFYDAGLPFTAVVTGNPYVAGQVPFLPSALNQSVVRYQVDAELSESNTVSHTGVIAWVFDTDAHASAALKAVPLAKWGEGTAPVDRAVSGNVVVVAVGFAGAQKAALDRALNALK*
Ga0168317_100012139	F041971	N/A	MRRPGRFVLMLGLAALAGGFAVSAHAGPGTSPGSWCGGVRWRLMTLSDPDRERVHLDRIPTSIANLDALRPPRTIGVRRTTGFQLVSWRMQAVIDRYRIASNGEIVLVLYDIPSGKYMDAYLPNPRCLGPKARDRTGMIAARNELTSHCPRPTAQWQLLGATVDLSGVGFWDPVHTTRGALPNGADLRPLTNLSLVAGCGIGTG*