Scaffold Ga0134076_10050945

Overview

Basic Information

• Taxon OID: 3300012976
• Scaffold ID: Ga0134076_10050945
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1562
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062593	Metagenome / Metatranscriptome	130	Y
F075944	Metagenome / Metatranscriptome	118	Y
F102790	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134076_100509451	F062593	AGGCGG	MAGRVREFLRAHKTDGVGEGLGVAKLEELLTRAEVLASQQRSGVVATRSSTKRRKNLRRALQSKLLLYLRAVGAVAAKETAELGEQFQVPPSNASQQALLTMARGMLEKAT
Ga0134076_100509453	F075944	AGGAG	MTYNVTLALGIVLLLGIIGFLIALREIRRDEARRRSNPSKE*
Ga0134076_100509454	F102790	N/A	VIASEYGVGVKTVQERVEDAMREVGTLLITFAPLDAALAEGSGIAGKFLSFVIVGVALFAGSLWLERRRTHDV*