Scaffold Ga0134077_10311618

Overview

Basic Information

• Taxon OID: 3300012972
• Scaffold ID: Ga0134077_10311618
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 663
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_2_20CM_2_69_23 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017980	Metagenome	237	Y
F082428	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134077_103116181	F017980	AGGA	MDSTNRTFVRRWLIPLALLASAGAAASSCSDPSPVGVEPPTFAARKVGGGRLISCTPVAYDSVTQVIGPAGGVLVAGGHVLFVDSLALSTPVSITAVAPSQSVNVVRFRPEGLKFKTGVHGIGALVATNLDNCNVHPNQVLKVVNVSDSLNILAYLDAPTTADSAVVIK
Ga0134077_103116182	F082428	N/A	QVTDSLAVIRYLATPDSTWIKVRKKAWSKGNQYVAGVLHHFSQYAVSW*