NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134077_10016670

Scaffold Ga0134077_10016670


Overview

Basic Information
Taxon OID3300012972 Open in IMG/M
Scaffold IDGa0134077_10016670 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2479
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084043Metagenome / Metatranscriptome112N
F088611Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0134077_100166702F084043GAGMASLGPLGKVDAQELVLDTGRMTTEDVVRYIKEYAKLRDGMSQTLRQLGIERKPESAIPETSDLKTTSSEAETQAAEARREYQKILSSVEAAERQFQEIEKQVSTVEQLKGTGFSFDEIMSGATGFRRILGRLPSKKLDAAQKALRALLKERAVMTTGAKRNDSVHILVATSTEDASQALQTLLLYEFVPTEIPSIEAADATAALMSWQTEKERIIREKQSHNGKLEVLRENLAGPLNRSADNIEETLLLLRSSLRLGDGSKAAHILARLDKPLTPIILNSLQKDGVLELD*
Ga0134077_100166703F088611GAGVSKPDLEALVTSKIAEAVQAAVDKVGRSEFETIVGIDDHDLAAILSVEDGYIGVAIVTIACQINKGHNDPDPAHSSVTECLKGTTIRVPPVGGQVRAPAVKQSIDKKRFQRLGSGTSPTGPLYEKKTLRLLSFSANTAAFLILGYFLGGIAISPLIGEPSCIGVSASPPGLVPCGGSIIGLVVSAIGEIGYTYYYFVKKL*
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Institute for Fundamental Biomedical Research
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