Scaffold Ga0126369_10453620

Overview

Basic Information

• Taxon OID: 3300012971
• Scaffold ID: Ga0126369_10453620
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1332
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AS23.2 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050930	Metagenome / Metatranscriptome	144	Y
F102664	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126369_104536201	F102664	N/A	TPIELGKWVFVVGQAEPWISATDRTKGCILWKQAIEAKRVFADKYADFNVRPQDGSGPITVGGTQTTGYKGAISHLAIWNRLLSVTEIASIWTAGTIDLRGTAMYHSYV*
Ga0126369_104536202	F050930	AGGAGG	MTRRRLVGQFGKAVEAAFTPYNLVPGPDDPPVLKVMSFEEFLRLQAEEILRIGSKIVERFEQLFRLYRVARTGDDFRDFKSLALEMAIELFPDFRFKADPDLLELLFPLYGLLANGTCVFDYQLLVTRMADGCFSIKKQPNQSKPGNQLVLLWLLADVEAVQLARKRPRPYSDREAIKKLMGEEPFKARWGDTNTKTLSDWLSAARRSFEHSGSDPSRKSAK*