Scaffold Ga0126369_10286091

Overview

Basic Information

• Taxon OID: 3300012971
• Scaffold ID: Ga0126369_10286091
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1642
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002139	Metagenome / Metatranscriptome	590	Y
F018589	Metagenome / Metatranscriptome	234	Y
F050630	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126369_102860911	F018589	AGGAGG	MYRPYVSAQADFRPLRDVQSQLRDLSQDFATSFNTGNYDQAAALFAHDGVLMAPHYEGAYGQKSVEHVLRKLGEAGYSDLRL
Ga0126369_102860912	F002139	AGGA	MTNRVAYAPRDVQNMCKQAERDHEARKLTVLMDRVKRQIAERDGGSPERGKGPAAAMKADSGILRLPNRSVPLER*
Ga0126369_102860914	F050630	GGA	MDQDKKARAAAASGDSTSATPAPTKPAFTRRFPRFVIDVRLQVKMFQAGEFRSCWGRSTEMGQDGIG