Scaffold Ga0126369_10001983

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0126369_10001983

Scaffold Ga0126369_10001983

Overview

Basic Information
Taxon OID	3300012971 Open in IMG/M
Scaffold ID	Ga0126369_10001983 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama - MetaG Plot_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	14484
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (55.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004609	Metagenome / Metatranscriptome	431	Y
F030173	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126369_1000198312	F004609	AGGAGG	MKCTTLFHVLFATALSVMLICSACAHQGTKMDPNAKTITIEGAVRDLACPVQNPAGTASNFDLKCTLDCVKHGSPIIILTKDGLLYFPISEDMPDSDQREKMMPYVGKYVQATGAVFERNGTRAIAITQIKELKSVPATTPG*
Ga0126369_100019837	F030173	N/A	MTVRANASSGPKAHLEPTGSHNESAVLSSIVWGIAVGLLLVVVGYLLDTHDTYFSALLPASFASGAIVGFFVWRRERQTSFVQPHGPFESGNRHIDKHVEHLVPFGPGGVGQWTGHPIGLVIVIGLVLMCLVSRTPLSVLALLSLLGGAVVGICLWLCHR*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.