Scaffold Ga0129338_1200921

Overview

Basic Information

• Taxon OID: 3300012970
• Scaffold ID: Ga0129338_1200921
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_RNA2 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 522
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047008	Metagenome / Metatranscriptome	150	N
F061852	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129338_12009211	F047008	AGGA	MKMTKDQKTCRKLWLEHVRESGGIVHTRPPMGDENGFCLVAMPCAYNPRHAKFYDVSFAWCADSDLFDRKVGEFIALDRQMFGQTTKLPGYIIDNMLEMDLV
Ga0129338_12009212	F061852	N/A	QKPAKSLLKKDVTADAIGAILRLSENDIESLTKANKSALKAIFDALANSKPL*