Scaffold Ga0129341_1209031

Overview

Basic Information

• Taxon OID: 3300012966
• Scaffold ID: Ga0129341_1209031
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_RNA2 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 510
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.5161
  • Long. (^o): -76.1223

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004814	Metagenome / Metatranscriptome	423	Y
F025178	Metagenome / Metatranscriptome	203	Y
F032870	Metagenome / Metatranscriptome	179	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129341_12090311	F032870	N/A	DAEELAAEIAYMQDDPSFHPRYNPKGKKDTNDLEARIERVEFRIEKLHKVNSRLIDEVRKLRRQLKTVVDQYRNKGAL*
Ga0129341_12090312	F025178	AGGAG	MNIKNTTIELDEYQKHWIHTRPYGHDIVIWSEPKNKITIKCKWPDKVRSKDGRVYDSRR*
Ga0129341_12090313	F004814	GGAG	MIQGDSIEYDLLAKWADFDCKGDYSCEIGIRDGMGSK