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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012961 Open in IMG/M |
| Scaffold ID | Ga0164302_10001351 Open in IMG/M |
| Source Dataset Name | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7699 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (54.55%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Mt. Pleasant research farm, Cornell University, New York | |||||||
| Coordinates | Lat. (o) | 42.4531 | Long. (o) | -76.3842 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005661 | Metagenome / Metatranscriptome | 393 | Y |
| F006886 | Metagenome / Metatranscriptome | 362 | Y |
| F058553 | Metagenome / Metatranscriptome | 135 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0164302_100013512 | F058553 | AGGAG | MAQTRAVMPARYVPLADELLQTTGVSDYSTLIGILLSRYGKHLLSTWEIANCQPSAPVNLQPSASVPIAQPETFTPMEF* |
| Ga0164302_100013514 | F005661 | AGCAG | MMQNFRVAQTPGAAKIKRQFNYESGPLTPEMVNAAGKEAKVLDLQKQLRTAYNRHDAKIRANTVEIERLTLEAQENGLTDTLQIDKYVAKAIAAGAKYDQNIINLQQKLQHELGLIKVEGASTQTLQNADFRQRLLLIKANHQALGQIQQNGFQQSLKAIQASPQQAIEMQAKRANFNAYINAKDFDPIPAVPSGSAGGNSPIASNNGKGFLGGLFDFFSGRN* |
| Ga0164302_100013515 | F006886 | N/A | MYSHDFDASEFDYLSTATPQQFEQQNQTKAPEVTNIERFWNLTGNWGEFGSYFGAGLSASLIVRAVPALIPAAVILIPAAGLGLAVFTLSADGAAKIRSQLILIAVGTALLSANWDAWLAWVIANSQLLLFTAAILIVWSCFLVTKIWSKLHNAS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |