Scaffold Ga0157620_1095184

Overview

Basic Information

• Taxon OID: 3300012959
• Scaffold ID: Ga0157620_1095184
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES150 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1019
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000980	Metagenome / Metatranscriptome	814	Y
F001043	Metagenome / Metatranscriptome	794	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157620_10951841	F000980	N/A	YNSAMTKYQKYTWVCTSDCDALIEYTFKDGYGWPNGVMDLTCRCGTSCTLLSVEDATIPYTDTPLTKEEPMETTETSAVTIPDTYNPNLLVTYKVIRGYSDAEYATDKVSSIEWDLHNSRTNSKTIHVLNSKIDTVKDIITEAYADSDDQDTLRAIAEALGIELVREVLFTATLEVSGTYSYNVLDSDYELDLDSEVTDALYADSNNGNITIDDTEVCHVREA*
Ga0157620_10951842	F000311	GGA	MYFELTAPDRLSLEMAYWDAQMIGLDPQAMSALTFNVGTGSIEKVSRIRDKHGLTESYVSNYEPTGYTRR*
Ga0157620_10951843	F001043	AGGAG	MSDYKDGFQDGYKFGREELMEKLREIDINDIDSWILDRLSDMIE