NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164299_10178808

Scaffold Ga0164299_10178808


Overview

Basic Information
Taxon OID3300012958 Open in IMG/M
Scaffold IDGa0164299_10178808 Open in IMG/M
Source Dataset NameUnamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1204
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Mt. Pleasant research farm, Cornell University, New York
CoordinatesLat. (o)42.4531Long. (o)-76.3842Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016614Metagenome246Y
F052517Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0164299_101788081F016614GGAGGMLMLLVIVAAGAATLAALWIFRGREISSLIDHYWTVQTQPAPIQSIGYEGSGSGGILIINDIRLSLNDLIPGLSLSVGSTKDNQLALATSGKVFPFGALASTSENTGERLATVPPPADQAFISTRHSVLRWPTPLDLNFMTG
Ga0164299_101788082F052517N/ANSSYAFSVMSFRRSDPFQSAAWGFAQSPGSRFSRWVELADAHALELIARPFTKETIACGVITDFGRSVGINSSQFRNSEIRRNEAVGPFTVSVAREVLRAIAPAGKPLKWLQAERFKKELAAHLKKKGLADARYCGLSTSLTRHIERELQSDNNAFAQSVWGSSWADIFAADVAEEFTPNDFEIRPPGWFRARRLRRAIRAMKARGDEILQDRALAVEAPWNDVAHRSGLISRE*

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