Scaffold Ga0164303_10366876

Overview

Basic Information

• Taxon OID: 3300012957
• Scaffold ID: Ga0164303_10366876
• Source Dataset Name: Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 877
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Mt. Pleasant research farm, Cornell University, New York
• Coordinates
  • Lat. (^o): 42.4531
  • Long. (^o): -76.3842
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000461	Metagenome / Metatranscriptome	1108	Y
F002604	Metagenome / Metatranscriptome	544	Y
F063136	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164303_103668761	F063136	N/A	TCDEYVHDKIPTPDFASFSAVGSLEARSMLSRWLIAAWLSGYSHAKRNNLIIALESFEENVNKLTNYCYDEKNFKVPIMEAIERIVGK*
Ga0164303_103668762	F002604	AGTAG	MHGKLSIIGAVATAIIVIPTALSAQMGGAVNPGGTVRGAVERGIPGPDLGTWRSPGREAHRSRKHSKAAIKQRR*
Ga0164303_103668763	F000461	AGCAG	MTALTAMDKLLFWLGIGAAQKGAGSKPPAQRNWVVSLVVGTLVAALIIVGAFLLLVSQKL