NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0154020_10045354

Scaffold Ga0154020_10045354


Overview

Basic Information
Taxon OID3300012956 Open in IMG/M
Scaffold IDGa0154020_10045354 Open in IMG/M
Source Dataset NameActive sludge microbial communities from wastewater, Klosterneuburg, Austria - Klosneuvirus_20160825_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4611
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Active Sludge → Active Sludge And Wastewater Microbial Communities From Klosterneuburg, Austria

Source Dataset Sampling Location
Location NameAustria: Klosterneuburg
CoordinatesLat. (o)48.3Long. (o)16.2Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061377Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0154020_100453542F061377N/AMSRVEFAVEKVKHLDENQAEALLDWLALRENRAALQQRLDEEIEVGLAQLKRGEIIPGDQVYAELQERSRIRRVGTGLSAAVCCLKSFPR*

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