Scaffold Ga0164298_10018315

Overview

Basic Information

• Taxon OID: 3300012955
• Scaffold ID: Ga0164298_10018315
• Source Dataset Name: Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2926
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Mt. Pleasant research farm, Cornell University, New York
• Coordinates
  • Lat. (^o): 42.4531
  • Long. (^o): -76.3842
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002850	Metagenome / Metatranscriptome	526	Y
F004352	Metagenome / Metatranscriptome	442	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164298_100183151	F002850	N/A	RDRGRPGVTGIHADIDALKGLHDALARYRHAQRDVTARGEDQLTATRASLETKASRLRAQLELGQAEYTACQDRAAQADPDDPVDCSGYARAVQQDSERLEQIRLWQQRIDAEAGEFSGIAGRFADLLENDLPRMEEHLVAIIASLEAARRVRAPAS*
Ga0164298_100183152	F004352	GGAGG	MISRPEQDGDQQLRLLGDAWDKAAEHWRDGPARQFGDGQLTPLLQESRTYLEALRTLMDTLEAADRETAG*