Scaffold Ga0164298_10015751

Overview

Basic Information

• Taxon OID: 3300012955
• Scaffold ID: Ga0164298_10015751
• Source Dataset Name: Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3095
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Mt. Pleasant research farm, Cornell University, New York
• Coordinates
  • Lat. (^o): 42.4531
  • Long. (^o): -76.3842
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007803	Metagenome / Metatranscriptome	344	Y
F047936	Metagenome	149	Y
F095709	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164298_100157512	F007803	GAG	MACRSLLIAVLLVTVADPALANWWIVRASDGKCIVVDIEPTEKDNNVTKVGKNVYQTPEQAEADVKRLCKESKAPGQPPRDPGNAK*
Ga0164298_100157514	F047936	GGA	VTAPTVTRLPRATDTFRWRLAIGAVLIAGGYLAWLVIPLVLGSDLTPRVKTALTAFLGSTPLLTKLIAIALLGRPTINFLKKHSFKLFRRAGAAD*
Ga0164298_100157516	F095709	AGGGGG	MPKVSEQVQRRIAALDAEYTIAQPKRPTRTIKRALVVIVLALLGITAISYAHRTTSDFVQLTLKQGPAAPKRQLSDAEAQAKWNAMWGSASTGLKRE*