Scaffold Ga0163111_11590620

Overview

Basic Information

• Taxon OID: 3300012954
• Scaffold ID: Ga0163111_11590620
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 649
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 0.8736
  • Long. (^o): -97.0511
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038718	Metagenome / Metatranscriptome	165	Y
F064079	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163111_115906201	F064079	N/A	YTLDGTGADGPRSEGGRRILLDNSRVYVRFLPFVSGRVHLGRINRY*
Ga0163111_115906202	F038718	N/A	RRVLLAAHARDVNILIWTSRKSVDHGTNDRVMVHDDGTRADGRSTGFGASYSQIVGSGVRRPAPSILGSRSNVVSSQAGYLARPRTKSPETQIYFITHRSGAFLVLRQRTVARGKRASRPIVNRTTAL*