Scaffold Ga0163111_11216356

Overview

Basic Information

• Taxon OID: 3300012954
• Scaffold ID: Ga0163111_11216356
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 736
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 0.8736
  • Long. (^o): -97.0511
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017931	Metagenome	238	Y
F062823	Metagenome	130	Y
F066698	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163111_112163562	F066698	GGAGG	MKYPCQGPMCHERPTKDRYNKSAKRLKGRNAYHAIDDNNNSYTIFCTSGCLNDWINDNVQNIVNQRPVTFNRERKFSEHIYHLNESGWVQKISDRVDNE*
Ga0163111_112163563	F062823	AGG	MIELLNLIFVESPLGLSVILIAGIIAIGIEGYRSS*
Ga0163111_112163564	F017931	N/A	YDKPDGTKGKSFVSKQGTPCLVYWDLDNDGWRMAVGEAKVRT*