Scaffold Ga0163111_10229306

Overview

Basic Information

• Taxon OID: 3300012954
• Scaffold ID: Ga0163111_10229306
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1618
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 0.8736
  • Long. (^o): -97.0511
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019668	Metagenome	228	N
F021557	Metagenome	218	N
F054939	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163111_102293061	F019668	N/A	MIDNKQINEVDMTKQTIDYVGVSGSNDSFGFYFTTEENQDIVYTNTWLLKDLVFALRTKYNLGSTYMASSSMDFATEEGFYHNGAASKVLSLASNIAESGKSIAEYTKKVLTENVDIRQIEFSDLKKEEAEDWYIDGKVAFNN*
Ga0163111_102293063	F054939	GGAG	MSVYTFTFITMVSMYLAYLWGRWLTRGDIAAEVANETLKKLERGGFIKYKMNNKTGEKEFVRFK*
Ga0163111_102293064	F021557	GAGG	MRLLLCALLITSNAIACDYKSDDLVQYEGHIESVRVIDKKVYPYVEDTRICTMHIESRISDEWYPSKAKYIFGSEMSEDTACSLAENRAKVKVMREKLPEKLTSKRNLSCNLTTVRNSCKVIYMNVEMPVVGAQRVKLKTCEE*