Scaffold Ga0163111_10127509

Overview

Basic Information

• Taxon OID: 3300012954
• Scaffold ID: Ga0163111_10127509
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2125
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 0.8736
  • Long. (^o): -97.0511
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F007531	Metagenome / Metatranscriptome	349	Y
F040642	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163111_101275096	F040642	AGG	MNRTNWILREIYKDGKKNFKWVLKGAGFVLALILVIKIFIYFDIKDLFLPIMGMLVPVGMLYHWYSMSYDDEQKKIIKKLKGDK*
Ga0163111_101275097	F007531	AGGAG	MMQRIQRLILDFAKDTGLTQRREMVHGTLYVKLHEEKECDHFHKVLRTFFKEQIDNEGGVNMYAVGDEFAFDFVPEDREAPVFVEPYSEEKFSGKEIMDPTDIDDKGIWSEFAEEEMFNNMPDEVDTLLNLEAESLKGK*
Ga0163111_101275098	F000302	N/A	MVAIMSQDTKDRIADLERQKIDLENQLEMLGYSGNLVRMHQIEEEIYEIEDTIGKLMP*