Scaffold Ga0163111_10015316

Overview

Basic Information

• Taxon OID: 3300012954
• Scaffold ID: Ga0163111_10015316
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5420
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 0.8736
  • Long. (^o): -97.0511
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063605	Metagenome	129	Y
F075989	Metagenome	118	Y
F095346	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163111_100153163	F075989	AGGAGG	MVIYHNQPVEEWESAKIQRALDILKGVVQREKNRHQMDGELSFSMMDLLESEVIPQLENELNYDPTPQYLWDDSGGESPVTLDEMHTAAYKQKYSL*
Ga0163111_100153165	F063605	N/A	MTIIRTDNIDDLLPSDYKDPWPPSDEEIEERERQAEWEDLQRSIPDAAERNRNLK*
Ga0163111_100153168	F095346	N/A	VKRSNEIRGHHVKEAKRLLSLGYGPSAVALRLERLFGISRATSFRDVALASTQMQSEDIAHDVDAPLPMLEQRDAMLRDLEQAWMEASAQHNVQELMQLSRAFERLHRMGGNQSQKY*