Scaffold Ga0163111_10001287

Overview

Basic Information

• Taxon OID: 3300012954
• Scaffold ID: Ga0163111_10001287
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15357
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (64.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 0.8736
  • Long. (^o): -97.0511
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027691	Metagenome / Metatranscriptome	194	Y
F046081	Metagenome / Metatranscriptome	152	Y
F065238	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163111_1000128717	F046081	GGGGG	MFWITAHKDFISKEEIELESKLQFLGDKDLSEGSCAYVDNMTDERVVIHWHDKIDTTKVVGTAELTRPMIINTAHPVTLKNLGDKSAVVDYIDLNTVVEHYRGI*
Ga0163111_1000128730	F027691	AGGA	MKQLTTMLAFLFGILIATGSYADESKTLEQRVSDLEKSAPSLPSGLFVNGEIEMYYDEDTYASGIDSRAEIITGLQSDIEAGPLTWAGGSARFDSHYSLNTALNNTIVEKQMGVGIGESTRIYLGETDAQRLGFAKTSKIGVPLVITESNSRIDHNEKVVLTFGGWDNNNEFDFDTHKLDRDLPVGASIGYDANTEKMYAGATVSLMGYAEVSYMQIGDKDGITDMDNNQQGYSLGTSLYRFDIPLVLGVEMWDDKNTGTYTKENRMDYGAMYGLTDEVVLGYHRVENDDIGTNGDYLSAVYTQGPIEIGAYYHMTESQNLGTGIVTENDNSVKGTFKYKF*
Ga0163111_1000128733	F065238	N/A	MVEYETVSVAELFQEELDALRDQYDKLIDRGTDSSLTTAENLEHVIRYFEARLGQTTDLYFEGEPGPDDTLH*